HyperDoc

STM Journal Publishing medium by Konrad Hinsen

One intended application of HyperDoc is scientific publications that combine code, data, and computed results with explanatory text. https://hyperdoc.khinsen.net/

There are two toy examples in this demo:

• Influenza epidemics in France presents a very simple data analysis, based on a dataset that is presented in a HyperDoc data paper. It explains the scientific choices and shows how and where they are implemented in the code.
• Acute Respiratory Infection incidence in France is the explorable data paper used in the first example. It presents a reusable data set, adds visualizations, and guides the reader towards its exploration.
• The example of influenza epidemics is taken from the MOOC Reproducible research: methodological principles for transparent science, where it is implemented in three variants of computational notebooks. You can consult them for comparison:
  • A Jupyter notebook containing Python code
  • An Rmarkdown notebook containing R code
  • An Emacs/OrgMode notebook containing a mixture of Python and R code